AustralieFrV1, Main, Exploration, bibRecord, 005D70

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

Identifieur interne : 005D70 ( Main/Exploration ); précédent : 005D69; suivant : 005D71

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

Auteurs : Pierre Nicolas [France] ; Ulrike M Der [Allemagne] ; Etienne Dervyn [France] ; Tatiana Rochat [France] ; Aurélie Leduc [France] ; Nathalie Pigeonneau [France] ; Elena Bidnenko [France] ; Elodie Marchadier [France] ; Mark Hoebeke [France] ; Stéphane Aymerich [France] ; Dörte Becher [Allemagne] ; Paola Bisicchia [Irlande (pays)] ; Eric Botella [Irlande (pays)] ; Olivier Delumeau [France] ; Geoff Doherty [Australie] ; Emma L. Denham [Pays-Bas] ; Mark J. Fogg [Royaume-Uni] ; Vincent Fromion [France] ; Anne Goelzer [France] ; Annette Hansen [Irlande (pays)] ; Elisabeth H Rtig [Allemagne] ; Colin R. Harwood [Royaume-Uni] ; Georg Homuth [Allemagne] ; Hanne Jarmer [Danemark] ; Matthieu Jules [France] ; Edda Klipp [Allemagne] ; Ludovic Le Chat [France] ; François Lecointe [France] ; Peter Lewis [Australie] ; Wolfram Liebermeister [Allemagne] ; Anika March [Allemagne] ; Ruben A. T. Mars [Pays-Bas] ; Priyanka Nannapaneni [Allemagne] ; David Noone [Irlande (pays)] ; Susanne Pohl [Royaume-Uni] ; Bernd Rinn [Suisse] ; Frank Rügheimer [France] ; Praveen K. Sappa [Allemagne] ; Franck Samson [France] ; Marc Schaffer [Allemagne] ; Benno Schwikowski [France] ; Leif Steil [Allemagne] ; Jörg Stülke [Allemagne] ; Thomas Wiegert [Allemagne] ; Kevin M. Devine [Irlande (pays)] ; Anthony J. Wilkinson [Royaume-Uni] ; Jan Maarten Van Dijl [Pays-Bas] ; Michael Hecker [Allemagne] ; Uwe Völker [Allemagne] ; Philippe Bessieres [France] ; Philippe Noirot [France]

Source :

Science : (Washington, D.C.) [ 0036-8075 ] ; 2012.

RBID : Pascal:12-0173708

Descripteurs français

Pascal (Inist)
- Transcriptome, Bacillus subtilis, Transcriptomique.

English descriptors

KwdEn :
- Bacillus subtilis, Transcriptome, Transcriptomics.

Abstract

Bacteria adapt to environmental stimuli by adjusting their transcriptomes in a complex manner, the full potential of which has yet to be established for any individual bacterial species. Here, we report the transcriptomes of Bacillus subtilis exposed to a wide range of environmental and nutritional conditions that the organism might encounter in nature. We comprehensively mapped transcription units (TUs) and grouped 2935 promoters into regulons controlled by various RNA polymerase sigma factors, accounting for ˜66% of the observed variance in transcriptional activity. This global classification of promoters and detailed description of TUs revealed that a large proportion of the detected antisense RNAs arose from potentially spurious transcription initiation by alternative sigma factors and from imperfect control of transcription termination.

Affiliations:

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Le document en format XML

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<author><name sortKey="Noone, David" sort="Noone, David" uniqKey="Noone D" first="David" last="Noone">David Noone</name>
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<country>Suisse</country>
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<author><name sortKey="Rugheimer, Frank" sort="Rugheimer, Frank" uniqKey="Rugheimer F" first="Frank" last="Rügheimer">Frank Rügheimer</name>
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<country>France</country>
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<author><name sortKey="Sappa, Praveen K" sort="Sappa, Praveen K" uniqKey="Sappa P" first="Praveen K." last="Sappa">Praveen K. Sappa</name>
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<author><name sortKey="Samson, Franck" sort="Samson, Franck" uniqKey="Samson F" first="Franck" last="Samson">Franck Samson</name>
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<author><name sortKey="Schaffer, Marc" sort="Schaffer, Marc" uniqKey="Schaffer M" first="Marc" last="Schaffer">Marc Schaffer</name>
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<author><name sortKey="Schwikowski, Benno" sort="Schwikowski, Benno" uniqKey="Schwikowski B" first="Benno" last="Schwikowski">Benno Schwikowski</name>
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<author><name sortKey="Steil, Leif" sort="Steil, Leif" uniqKey="Steil L" first="Leif" last="Steil">Leif Steil</name>
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<author><name sortKey="Stulke, Jorg" sort="Stulke, Jorg" uniqKey="Stulke J" first="Jörg" last="Stülke">Jörg Stülke</name>
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<author><name sortKey="Wiegert, Thomas" sort="Wiegert, Thomas" uniqKey="Wiegert T" first="Thomas" last="Wiegert">Thomas Wiegert</name>
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<country>Allemagne</country>
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<author><name sortKey="Devine, Kevin M" sort="Devine, Kevin M" uniqKey="Devine K" first="Kevin M." last="Devine">Kevin M. Devine</name>
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<author><name sortKey="Wilkinson, Anthony J" sort="Wilkinson, Anthony J" uniqKey="Wilkinson A" first="Anthony J." last="Wilkinson">Anthony J. Wilkinson</name>
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<author><name sortKey="Hecker, Michael" sort="Hecker, Michael" uniqKey="Hecker M" first="Michael" last="Hecker">Michael Hecker</name>
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<country>Allemagne</country>
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<author><name sortKey="Volker, Uwe" sort="Volker, Uwe" uniqKey="Volker U" first="Uwe" last="Völker">Uwe Völker</name>
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<country>Allemagne</country>
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</author>
<author><name sortKey="Bessieres, Philippe" sort="Bessieres, Philippe" uniqKey="Bessieres P" first="Philippe" last="Bessieres">Philippe Bessieres</name>
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<author><name sortKey="Noirot, Philippe" sort="Noirot, Philippe" uniqKey="Noirot P" first="Philippe" last="Noirot">Philippe Noirot</name>
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</titleStmt>
<publicationStmt><idno type="wicri:source">INIST</idno>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis</title>
<author><name sortKey="Nicolas, Pierre" sort="Nicolas, Pierre" uniqKey="Nicolas P" first="Pierre" last="Nicolas">Pierre Nicolas</name>
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<author><name sortKey="M Der, Ulrike" sort="M Der, Ulrike" uniqKey="M Der U" first="Ulrike" last="M Der">Ulrike M Der</name>
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<country>Allemagne</country>
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<wicri:noRegion>Ernst-Moritz-Arndt-University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Dervyn, Etienne" sort="Dervyn, Etienne" uniqKey="Dervyn E" first="Etienne" last="Dervyn">Etienne Dervyn</name>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rochat, Tatiana" sort="Rochat, Tatiana" uniqKey="Rochat T" first="Tatiana" last="Rochat">Tatiana Rochat</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Leduc, Aurelie" sort="Leduc, Aurelie" uniqKey="Leduc A" first="Aurélie" last="Leduc">Aurélie Leduc</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>INRA, UR1077, Mathématique Informatique et Genome</s1>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pigeonneau, Nathalie" sort="Pigeonneau, Nathalie" uniqKey="Pigeonneau N" first="Nathalie" last="Pigeonneau">Nathalie Pigeonneau</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bidnenko, Elena" sort="Bidnenko, Elena" uniqKey="Bidnenko E" first="Elena" last="Bidnenko">Elena Bidnenko</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Marchadier, Elodie" sort="Marchadier, Elodie" uniqKey="Marchadier E" first="Elodie" last="Marchadier">Elodie Marchadier</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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<sZ>28 aut.</sZ>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hoebeke, Mark" sort="Hoebeke, Mark" uniqKey="Hoebeke M" first="Mark" last="Hoebeke">Mark Hoebeke</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>INRA, UR1077, Mathématique Informatique et Genome</s1>
<s2>78350 Jouy-en-Josas</s2>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Aymerich, Stephane" sort="Aymerich, Stephane" uniqKey="Aymerich S" first="Stéphane" last="Aymerich">Stéphane Aymerich</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Becher, Dorte" sort="Becher, Dorte" uniqKey="Becher D" first="Dörte" last="Becher">Dörte Becher</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Institute for Microbiology, Ernst-Moritz-Arndt University Greifswald</s1>
<s2>17489 Greifswald</s2>
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</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bisicchia, Paola" sort="Bisicchia, Paola" uniqKey="Bisicchia P" first="Paola" last="Bisicchia">Paola Bisicchia</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Smurfit Institute of Genetics, Trinity College Dublin</s1>
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<country>Irlande (pays)</country>
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</affiliation>
</author>
<author><name sortKey="Botella, Eric" sort="Botella, Eric" uniqKey="Botella E" first="Eric" last="Botella">Eric Botella</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Smurfit Institute of Genetics, Trinity College Dublin</s1>
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<country>Irlande (pays)</country>
<wicri:noRegion>Dublin</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Delumeau, Olivier" sort="Delumeau, Olivier" uniqKey="Delumeau O" first="Olivier" last="Delumeau">Olivier Delumeau</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Doherty, Geoff" sort="Doherty, Geoff" uniqKey="Doherty G" first="Geoff" last="Doherty">Geoff Doherty</name>
<affiliation wicri:level="1"><inist:fA14 i1="06"><s1>School of Environmental and Life Sciences, University of Newcastle</s1>
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<sZ>15 aut.</sZ>
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</inist:fA14>
<country>Australie</country>
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</affiliation>
</author>
<author><name sortKey="Denham, Emma L" sort="Denham, Emma L" uniqKey="Denham E" first="Emma L." last="Denham">Emma L. Denham</name>
<affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Department of Medical Microbiology, University of Groningen and University Medical Center Groningen</s1>
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<country>Pays-Bas</country>
<wicri:noRegion>9700 RB Groningen</wicri:noRegion>
</affiliation>
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<author><name sortKey="Fogg, Mark J" sort="Fogg, Mark J" uniqKey="Fogg M" first="Mark J." last="Fogg">Mark J. Fogg</name>
<affiliation wicri:level="1"><inist:fA14 i1="08"><s1>York Structural Biology Laboratory, Department of Chemistry, University of York</s1>
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<country>Royaume-Uni</country>
<wicri:noRegion>York Y010 5YW</wicri:noRegion>
</affiliation>
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<author><name sortKey="Fromion, Vincent" sort="Fromion, Vincent" uniqKey="Fromion V" first="Vincent" last="Fromion">Vincent Fromion</name>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goelzer, Anne" sort="Goelzer, Anne" uniqKey="Goelzer A" first="Anne" last="Goelzer">Anne Goelzer</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>INRA, UR1077, Mathématique Informatique et Genome</s1>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hansen, Annette" sort="Hansen, Annette" uniqKey="Hansen A" first="Annette" last="Hansen">Annette Hansen</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Smurfit Institute of Genetics, Trinity College Dublin</s1>
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<country>Irlande (pays)</country>
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</affiliation>
</author>
<author><name sortKey="H Rtig, Elisabeth" sort="H Rtig, Elisabeth" uniqKey="H Rtig E" first="Elisabeth" last="H Rtig">Elisabeth H Rtig</name>
<affiliation wicri:level="1"><inist:fA14 i1="09"><s1>Institute of Microbiology, Technical University of Braunschweig</s1>
<s2>38106 Braunschweig</s2>
<s3>DEU</s3>
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<country>Allemagne</country>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
<wicri:noRegion>Technical University of Braunschweig</wicri:noRegion>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harwood, Colin R" sort="Harwood, Colin R" uniqKey="Harwood C" first="Colin R." last="Harwood">Colin R. Harwood</name>
<affiliation wicri:level="1"><inist:fA14 i1="10"><s1>Centre for Bacterial Cell Biology, Institute, of Cell and Molecular Biosciences, Newcastle University of Newcastle</s1>
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</inist:fA14>
<country>Royaume-Uni</country>
<wicri:noRegion>Newcastle upon Tyne, NE2 4AX</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Homuth, Georg" sort="Homuth, Georg" uniqKey="Homuth G" first="Georg" last="Homuth">Georg Homuth</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald</s1>
<s2>17489 Greifswald</s2>
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<country>Allemagne</country>
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<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jarmer, Hanne" sort="Jarmer, Hanne" uniqKey="Jarmer H" first="Hanne" last="Jarmer">Hanne Jarmer</name>
<affiliation wicri:level="1"><inist:fA14 i1="11"><s1>Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark</s1>
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</inist:fA14>
<country>Danemark</country>
<wicri:noRegion>2800 Kgs. Lyngby</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jules, Matthieu" sort="Jules, Matthieu" uniqKey="Jules M" first="Matthieu" last="Jules">Matthieu Jules</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Klipp, Edda" sort="Klipp, Edda" uniqKey="Klipp E" first="Edda" last="Klipp">Edda Klipp</name>
<affiliation wicri:level="3"><inist:fA14 i1="12"><s1>Theoretical Biophysics, Humboldt University Berlin</s1>
<s2>10115 Berlin</s2>
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</inist:fA14>
<country>Allemagne</country>
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</affiliation>
</author>
<author><name sortKey="Le Chat, Ludovic" sort="Le Chat, Ludovic" uniqKey="Le Chat L" first="Ludovic" last="Le Chat">Ludovic Le Chat</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lecointe, Francois" sort="Lecointe, Francois" uniqKey="Lecointe F" first="François" last="Lecointe">François Lecointe</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
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<sZ>28 aut.</sZ>
<sZ>51 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>UMR1319 Micalis</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lewis, Peter" sort="Lewis, Peter" uniqKey="Lewis P" first="Peter" last="Lewis">Peter Lewis</name>
<affiliation wicri:level="1"><inist:fA14 i1="06"><s1>School of Environmental and Life Sciences, University of Newcastle</s1>
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<s3>AUS</s3>
<sZ>15 aut.</sZ>
<sZ>29 aut.</sZ>
</inist:fA14>
<country>Australie</country>
<wicri:noRegion>Callaghan, NSW 2308</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liebermeister, Wolfram" sort="Liebermeister, Wolfram" uniqKey="Liebermeister W" first="Wolfram" last="Liebermeister">Wolfram Liebermeister</name>
<affiliation wicri:level="3"><inist:fA14 i1="12"><s1>Theoretical Biophysics, Humboldt University Berlin</s1>
<s2>10115 Berlin</s2>
<s3>DEU</s3>
<sZ>26 aut.</sZ>
<sZ>30 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<placeName><region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="March, Anika" sort="March, Anika" uniqKey="March A" first="Anika" last="March">Anika March</name>
<affiliation wicri:level="1"><inist:fA14 i1="09"><s1>Institute of Microbiology, Technical University of Braunschweig</s1>
<s2>38106 Braunschweig</s2>
<s3>DEU</s3>
<sZ>21 aut.</sZ>
<sZ>31 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
<wicri:noRegion>Technical University of Braunschweig</wicri:noRegion>
<wicri:noRegion>38106 Braunschweig</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Mars, Ruben A T" sort="Mars, Ruben A T" uniqKey="Mars R" first="Ruben A. T." last="Mars">Ruben A. T. Mars</name>
<affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Department of Medical Microbiology, University of Groningen and University Medical Center Groningen</s1>
<s2>9700 RB Groningen</s2>
<s3>NLD</s3>
<sZ>16 aut.</sZ>
<sZ>32 aut.</sZ>
<sZ>47 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>9700 RB Groningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Nannapaneni, Priyanka" sort="Nannapaneni, Priyanka" uniqKey="Nannapaneni P" first="Priyanka" last="Nannapaneni">Priyanka Nannapaneni</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>23 aut.</sZ>
<sZ>33 aut.</sZ>
<sZ>38 aut.</sZ>
<sZ>42 aut.</sZ>
<sZ>49 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt-University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Noone, David" sort="Noone, David" uniqKey="Noone D" first="David" last="Noone">David Noone</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Smurfit Institute of Genetics, Trinity College Dublin</s1>
<s2>Dublin</s2>
<s3>IRL</s3>
<sZ>12 aut.</sZ>
<sZ>13 aut.</sZ>
<sZ>20 aut.</sZ>
<sZ>34 aut.</sZ>
<sZ>45 aut.</sZ>
</inist:fA14>
<country>Irlande (pays)</country>
<wicri:noRegion>Dublin</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pohl, Susanne" sort="Pohl, Susanne" uniqKey="Pohl S" first="Susanne" last="Pohl">Susanne Pohl</name>
<affiliation wicri:level="1"><inist:fA14 i1="10"><s1>Centre for Bacterial Cell Biology, Institute, of Cell and Molecular Biosciences, Newcastle University of Newcastle</s1>
<s2>Newcastle upon Tyne, NE2 4AX</s2>
<s3>GBR</s3>
<sZ>22 aut.</sZ>
<sZ>35 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<wicri:noRegion>Newcastle upon Tyne, NE2 4AX</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rinn, Bernd" sort="Rinn, Bernd" uniqKey="Rinn B" first="Bernd" last="Rinn">Bernd Rinn</name>
<affiliation wicri:level="4"><inist:fA14 i1="13"><s1>Center for Information Sciences and Databases, Department of Biosystems Science and Engineering, ETH Zurich</s1>
<s2>4058 Basel</s2>
<s3>CHE</s3>
<sZ>36 aut.</sZ>
</inist:fA14>
<country>Suisse</country>
<placeName><settlement type="city">Zurich</settlement>
<region nuts="3" type="region">Canton de Zurich</region>
</placeName>
<orgName type="university">École polytechnique fédérale de Zurich</orgName>
</affiliation>
</author>
<author><name sortKey="Rugheimer, Frank" sort="Rugheimer, Frank" uniqKey="Rugheimer F" first="Frank" last="Rügheimer">Frank Rügheimer</name>
<affiliation wicri:level="3"><inist:fA14 i1="14"><s1>Systems Biology Lab and CNRS URA 2171, Institut Pasteur</s1>
<s2>75724 Paris</s2>
<s3>FRA</s3>
<sZ>37 aut.</sZ>
<sZ>41 aut.</sZ>
</inist:fA14>
<country>France</country>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sappa, Praveen K" sort="Sappa, Praveen K" uniqKey="Sappa P" first="Praveen K." last="Sappa">Praveen K. Sappa</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>23 aut.</sZ>
<sZ>33 aut.</sZ>
<sZ>38 aut.</sZ>
<sZ>42 aut.</sZ>
<sZ>49 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt-University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Samson, Franck" sort="Samson, Franck" uniqKey="Samson F" first="Franck" last="Samson">Franck Samson</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>INRA, UR1077, Mathématique Informatique et Genome</s1>
<s2>78350 Jouy-en-Josas</s2>
<s3>FRA</s3>
<sZ>1 aut.</sZ>
<sZ>5 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>18 aut.</sZ>
<sZ>19 aut.</sZ>
<sZ>39 aut.</sZ>
<sZ>50 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Schaffer, Marc" sort="Schaffer, Marc" uniqKey="Schaffer M" first="Marc" last="Schaffer">Marc Schaffer</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Institute for Microbiology, Ernst-Moritz-Arndt University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>40 aut.</sZ>
<sZ>48 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Schwikowski, Benno" sort="Schwikowski, Benno" uniqKey="Schwikowski B" first="Benno" last="Schwikowski">Benno Schwikowski</name>
<affiliation wicri:level="1"><inist:fA14 i1="14"><s1>Systems Biology Lab and CNRS URA 2171, Institut Pasteur</s1>
<s2>75724 Paris</s2>
<s3>FRA</s3>
<sZ>37 aut.</sZ>
<sZ>41 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>75724 Paris</wicri:noRegion>
<placeName><settlement type="city">Paris</settlement>
<region type="région" nuts="2">Île-de-France</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Steil, Leif" sort="Steil, Leif" uniqKey="Steil L" first="Leif" last="Steil">Leif Steil</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>23 aut.</sZ>
<sZ>33 aut.</sZ>
<sZ>38 aut.</sZ>
<sZ>42 aut.</sZ>
<sZ>49 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt-University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Stulke, Jorg" sort="Stulke, Jorg" uniqKey="Stulke J" first="Jörg" last="Stülke">Jörg Stülke</name>
<affiliation wicri:level="3"><inist:fA14 i1="15"><s1>Department of General Microbiology, Georg-August-University Göttingen</s1>
<s2>37077 Göttingen</s2>
<s3>DEU</s3>
<sZ>43 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<placeName><region type="land" nuts="2">Basse-Saxe</region>
<settlement type="city">Göttingen</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wiegert, Thomas" sort="Wiegert, Thomas" uniqKey="Wiegert T" first="Thomas" last="Wiegert">Thomas Wiegert</name>
<affiliation wicri:level="1"><inist:fA14 i1="16"><s1>FN Biotechnologie, Hochschule Zittau/Görlitz</s1>
<s2>02763 Zittau</s2>
<s3>DEU</s3>
<sZ>44 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>02763 Zittau</wicri:noRegion>
<wicri:noRegion>Hochschule Zittau/Görlitz</wicri:noRegion>
<wicri:noRegion>02763 Zittau</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Devine, Kevin M" sort="Devine, Kevin M" uniqKey="Devine K" first="Kevin M." last="Devine">Kevin M. Devine</name>
<affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Smurfit Institute of Genetics, Trinity College Dublin</s1>
<s2>Dublin</s2>
<s3>IRL</s3>
<sZ>12 aut.</sZ>
<sZ>13 aut.</sZ>
<sZ>20 aut.</sZ>
<sZ>34 aut.</sZ>
<sZ>45 aut.</sZ>
</inist:fA14>
<country>Irlande (pays)</country>
<wicri:noRegion>Dublin</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wilkinson, Anthony J" sort="Wilkinson, Anthony J" uniqKey="Wilkinson A" first="Anthony J." last="Wilkinson">Anthony J. Wilkinson</name>
<affiliation wicri:level="1"><inist:fA14 i1="08"><s1>York Structural Biology Laboratory, Department of Chemistry, University of York</s1>
<s2>York Y010 5YW</s2>
<s3>GBR</s3>
<sZ>17 aut.</sZ>
<sZ>46 aut.</sZ>
</inist:fA14>
<country>Royaume-Uni</country>
<wicri:noRegion>York Y010 5YW</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Dijl, Jan Maarten Van" sort="Dijl, Jan Maarten Van" uniqKey="Dijl J" first="Jan Maarten Van" last="Dijl">Jan Maarten Van Dijl</name>
<affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Department of Medical Microbiology, University of Groningen and University Medical Center Groningen</s1>
<s2>9700 RB Groningen</s2>
<s3>NLD</s3>
<sZ>16 aut.</sZ>
<sZ>32 aut.</sZ>
<sZ>47 aut.</sZ>
</inist:fA14>
<country>Pays-Bas</country>
<wicri:noRegion>9700 RB Groningen</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hecker, Michael" sort="Hecker, Michael" uniqKey="Hecker M" first="Michael" last="Hecker">Michael Hecker</name>
<affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Institute for Microbiology, Ernst-Moritz-Arndt University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>11 aut.</sZ>
<sZ>40 aut.</sZ>
<sZ>48 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Volker, Uwe" sort="Volker, Uwe" uniqKey="Volker U" first="Uwe" last="Völker">Uwe Völker</name>
<affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald</s1>
<s2>17489 Greifswald</s2>
<s3>DEU</s3>
<sZ>2 aut.</sZ>
<sZ>23 aut.</sZ>
<sZ>33 aut.</sZ>
<sZ>38 aut.</sZ>
<sZ>42 aut.</sZ>
<sZ>49 aut.</sZ>
</inist:fA14>
<country>Allemagne</country>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
<wicri:noRegion>Ernst-Moritz-Arndt-University Greifswald</wicri:noRegion>
<wicri:noRegion>17489 Greifswald</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Bessieres, Philippe" sort="Bessieres, Philippe" uniqKey="Bessieres P" first="Philippe" last="Bessieres">Philippe Bessieres</name>
<affiliation wicri:level="1"><inist:fA14 i1="01"><s1>INRA, UR1077, Mathématique Informatique et Genome</s1>
<s2>78350 Jouy-en-Josas</s2>
<s3>FRA</s3>
<sZ>1 aut.</sZ>
<sZ>5 aut.</sZ>
<sZ>9 aut.</sZ>
<sZ>18 aut.</sZ>
<sZ>19 aut.</sZ>
<sZ>39 aut.</sZ>
<sZ>50 aut.</sZ>
</inist:fA14>
<country>France</country>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
<wicri:noRegion>Mathématique Informatique et Genome</wicri:noRegion>
<wicri:noRegion>78350 Jouy-en-Josas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Noirot, Philippe" sort="Noirot, Philippe" uniqKey="Noirot P" first="Philippe" last="Noirot">Philippe Noirot</name>
<affiliation wicri:level="3"><inist:fA14 i1="04"><s1>INRA, UMR1319 Micalis</s1>
<s2>78350 Jouy-en-Josas</s2>
<s3>FRA</s3>
<sZ>3 aut.</sZ>
<sZ>4 aut.</sZ>
<sZ>6 aut.</sZ>
<sZ>7 aut.</sZ>
<sZ>8 aut.</sZ>
<sZ>10 aut.</sZ>
<sZ>14 aut.</sZ>
<sZ>25 aut.</sZ>
<sZ>27 aut.</sZ>
<sZ>28 aut.</sZ>
<sZ>51 aut.</sZ>
</inist:fA14>
<country>France</country>
<placeName><region type="region" nuts="2">Île-de-France</region>
<settlement type="city">Jouy-en-Josas</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j" type="main">Science : (Washington, D.C.)</title>
<title level="j" type="abbreviated">Science : (Wash. D.C.)</title>
<idno type="ISSN">0036-8075</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
<seriesStmt><title level="j" type="main">Science : (Washington, D.C.)</title>
<title level="j" type="abbreviated">Science : (Wash. D.C.)</title>
<idno type="ISSN">0036-8075</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacillus subtilis</term>
<term>Transcriptome</term>
<term>Transcriptomics</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Transcriptome</term>
<term>Bacillus subtilis</term>
<term>Transcriptomique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Bacteria adapt to environmental stimuli by adjusting their transcriptomes in a complex manner, the full potential of which has yet to be established for any individual bacterial species. Here, we report the transcriptomes of Bacillus subtilis exposed to a wide range of environmental and nutritional conditions that the organism might encounter in nature. We comprehensively mapped transcription units (TUs) and grouped 2935 promoters into regulons controlled by various RNA polymerase sigma factors, accounting for ˜66% of the observed variance in transcriptional activity. This global classification of promoters and detailed description of TUs revealed that a large proportion of the detected antisense RNAs arose from potentially spurious transcription initiation by alternative sigma factors and from imperfect control of transcription termination.</div>
</front>
</TEI>
<affiliations><list><country><li>Allemagne</li>
<li>Australie</li>
<li>Danemark</li>
<li>France</li>
<li>Irlande (pays)</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
<li>Suisse</li>
</country>
<region><li>Basse-Saxe</li>
<li>Berlin</li>
<li>Canton de Zurich</li>
<li>Île-de-France</li>
</region>
<settlement><li>Berlin</li>
<li>Göttingen</li>
<li>Jouy-en-Josas</li>
<li>Paris</li>
<li>Zurich</li>
</settlement>
<orgName><li>École polytechnique fédérale de Zurich</li>
</orgName>
</list>
<tree><country name="France"><region name="Île-de-France"><name sortKey="Nicolas, Pierre" sort="Nicolas, Pierre" uniqKey="Nicolas P" first="Pierre" last="Nicolas">Pierre Nicolas</name>
</region>
<name sortKey="Aymerich, Stephane" sort="Aymerich, Stephane" uniqKey="Aymerich S" first="Stéphane" last="Aymerich">Stéphane Aymerich</name>
<name sortKey="Bessieres, Philippe" sort="Bessieres, Philippe" uniqKey="Bessieres P" first="Philippe" last="Bessieres">Philippe Bessieres</name>
<name sortKey="Bidnenko, Elena" sort="Bidnenko, Elena" uniqKey="Bidnenko E" first="Elena" last="Bidnenko">Elena Bidnenko</name>
<name sortKey="Delumeau, Olivier" sort="Delumeau, Olivier" uniqKey="Delumeau O" first="Olivier" last="Delumeau">Olivier Delumeau</name>
<name sortKey="Dervyn, Etienne" sort="Dervyn, Etienne" uniqKey="Dervyn E" first="Etienne" last="Dervyn">Etienne Dervyn</name>
<name sortKey="Fromion, Vincent" sort="Fromion, Vincent" uniqKey="Fromion V" first="Vincent" last="Fromion">Vincent Fromion</name>
<name sortKey="Goelzer, Anne" sort="Goelzer, Anne" uniqKey="Goelzer A" first="Anne" last="Goelzer">Anne Goelzer</name>
<name sortKey="Hoebeke, Mark" sort="Hoebeke, Mark" uniqKey="Hoebeke M" first="Mark" last="Hoebeke">Mark Hoebeke</name>
<name sortKey="Jules, Matthieu" sort="Jules, Matthieu" uniqKey="Jules M" first="Matthieu" last="Jules">Matthieu Jules</name>
<name sortKey="Le Chat, Ludovic" sort="Le Chat, Ludovic" uniqKey="Le Chat L" first="Ludovic" last="Le Chat">Ludovic Le Chat</name>
<name sortKey="Lecointe, Francois" sort="Lecointe, Francois" uniqKey="Lecointe F" first="François" last="Lecointe">François Lecointe</name>
<name sortKey="Leduc, Aurelie" sort="Leduc, Aurelie" uniqKey="Leduc A" first="Aurélie" last="Leduc">Aurélie Leduc</name>
<name sortKey="Marchadier, Elodie" sort="Marchadier, Elodie" uniqKey="Marchadier E" first="Elodie" last="Marchadier">Elodie Marchadier</name>
<name sortKey="Noirot, Philippe" sort="Noirot, Philippe" uniqKey="Noirot P" first="Philippe" last="Noirot">Philippe Noirot</name>
<name sortKey="Pigeonneau, Nathalie" sort="Pigeonneau, Nathalie" uniqKey="Pigeonneau N" first="Nathalie" last="Pigeonneau">Nathalie Pigeonneau</name>
<name sortKey="Rochat, Tatiana" sort="Rochat, Tatiana" uniqKey="Rochat T" first="Tatiana" last="Rochat">Tatiana Rochat</name>
<name sortKey="Rugheimer, Frank" sort="Rugheimer, Frank" uniqKey="Rugheimer F" first="Frank" last="Rügheimer">Frank Rügheimer</name>
<name sortKey="Samson, Franck" sort="Samson, Franck" uniqKey="Samson F" first="Franck" last="Samson">Franck Samson</name>
<name sortKey="Schwikowski, Benno" sort="Schwikowski, Benno" uniqKey="Schwikowski B" first="Benno" last="Schwikowski">Benno Schwikowski</name>
</country>
<country name="Allemagne"><noRegion><name sortKey="M Der, Ulrike" sort="M Der, Ulrike" uniqKey="M Der U" first="Ulrike" last="M Der">Ulrike M Der</name>
</noRegion>
<name sortKey="Becher, Dorte" sort="Becher, Dorte" uniqKey="Becher D" first="Dörte" last="Becher">Dörte Becher</name>
<name sortKey="H Rtig, Elisabeth" sort="H Rtig, Elisabeth" uniqKey="H Rtig E" first="Elisabeth" last="H Rtig">Elisabeth H Rtig</name>
<name sortKey="Hecker, Michael" sort="Hecker, Michael" uniqKey="Hecker M" first="Michael" last="Hecker">Michael Hecker</name>
<name sortKey="Homuth, Georg" sort="Homuth, Georg" uniqKey="Homuth G" first="Georg" last="Homuth">Georg Homuth</name>
<name sortKey="Klipp, Edda" sort="Klipp, Edda" uniqKey="Klipp E" first="Edda" last="Klipp">Edda Klipp</name>
<name sortKey="Liebermeister, Wolfram" sort="Liebermeister, Wolfram" uniqKey="Liebermeister W" first="Wolfram" last="Liebermeister">Wolfram Liebermeister</name>
<name sortKey="M Der, Ulrike" sort="M Der, Ulrike" uniqKey="M Der U" first="Ulrike" last="M Der">Ulrike M Der</name>
<name sortKey="March, Anika" sort="March, Anika" uniqKey="March A" first="Anika" last="March">Anika March</name>
<name sortKey="Nannapaneni, Priyanka" sort="Nannapaneni, Priyanka" uniqKey="Nannapaneni P" first="Priyanka" last="Nannapaneni">Priyanka Nannapaneni</name>
<name sortKey="Sappa, Praveen K" sort="Sappa, Praveen K" uniqKey="Sappa P" first="Praveen K." last="Sappa">Praveen K. Sappa</name>
<name sortKey="Schaffer, Marc" sort="Schaffer, Marc" uniqKey="Schaffer M" first="Marc" last="Schaffer">Marc Schaffer</name>
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	Serveur d'exploration sur les relations entre la France et l'Australie
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Serveur d'exploration sur les relations entre la France et l'Australie

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

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Abstract

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